PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf02714g01010.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family M-type_MADS
Protein Properties Length: 311aa    MW: 35959.2 Da    PI: 8.8069
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf02714g01010.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF35.99.7e-12445344
                              --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
                    SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                              i+ +  r  tf kR++ + KK +EL +LC+++ ++i++++++
  Peinf101Scf02714g01010.1  4 ISKEKARDATFKKRKESLKKKLHELTTLCNVNGCMIMYGPEQ 45
                              888999*********************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554551.96E-12167IPR002100Transcription factor, MADS-box
PROSITE profilePS5006611.633142IPR002100Transcription factor, MADS-box
SMARTSM004329.4E-4158IPR002100Transcription factor, MADS-box
PfamPF003194.2E-13444IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MELISKEKAR DATFKKRKES LKKKLHELTT LCNVNGCMIM YGPEQSNGSN SEPEIWTNSS  60
NNTKSLQEKE IQNLIDGYKK SDVVTRSAKA FGLSEYFIDR NKNVEKELFK LRKMNVDKKY  120
PGWLKFMDHL SEIKLREFIS IFEDKVEKVK FRIDLLKGNM NIASEYFVEA AREGMELSQL  180
TNYCDNVSPL MVQGGSEMGG FMNNHHEQAI YSYCNSIVHH HEQAIFPYWQ YNGAASSSGS  240
NNTRGAMMKY ETMMTYNMMC NNQMPYSPYV APAIRQPAPY MMMPGTFPQI DLPSRENERD  300
VKGKLLPYLR K
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009774508.11e-131PREDICTED: agamous-like MADS-box protein AGL80
TrEMBLM1CBS41e-107M1CBS4_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000641201e-107(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24572253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G55690.14e-07M-type_MADS family protein